# Copyright 1999-2025 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Gene Set Enrichment Meta-Analysis'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/GSEMA_0.99.4.tar.gz"
LICENSE='GPL-2'

IUSE="${IUSE-} r_suggests_biocgenerics r_suggests_biocstyle r_suggests_knitr
	r_suggests_qpdf r_suggests_rmarkdown r_suggests_runit"
R_SUGGESTS="
	r_suggests_biocgenerics? ( sci-BIOC/BiocGenerics )
	r_suggests_biocstyle? ( sci-BIOC/BiocStyle )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_qpdf? ( sci-CRAN/qpdf )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_runit? ( sci-CRAN/RUnit )
"
DEPEND="sci-CRAN/pbapply
	sci-CRAN/plyr
	sci-BIOC/impute
	sci-CRAN/RColorBrewer
	sci-BIOC/Biobase
	sci-BIOC/GSVA
	>=dev-lang/R-4.4
	sci-BIOC/limma
	sci-CRAN/Rdpack
	sci-CRAN/progress
	sci-CRAN/doParallel
	sci-BIOC/BiocParallel
	sci-CRAN/metafor
	sci-CRAN/scales
	sci-CRAN/pheatmap
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"