# Copyright 1999-2025 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Automated Classification of Mass Spectra'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/MSclassifR_0.5.0.tar.gz"
LICENSE='GPL-3+'

IUSE="${IUSE-} r_suggests_boruta r_suggests_doparallel r_suggests_e1071
	r_suggests_foreach r_suggests_foreign r_suggests_glmnet
	r_suggests_matrix r_suggests_mclust r_suggests_metap
	r_suggests_mixomics r_suggests_mltools r_suggests_nnet
	r_suggests_randomforest r_suggests_ranger r_suggests_rmarkdown
	r_suggests_vita r_suggests_vsurf r_suggests_xgboost"
R_SUGGESTS="
	r_suggests_boruta? ( sci-CRAN/Boruta )
	r_suggests_doparallel? ( sci-CRAN/doParallel )
	r_suggests_e1071? ( sci-CRAN/e1071 )
	r_suggests_foreach? ( sci-CRAN/foreach )
	r_suggests_foreign? ( virtual/foreign )
	r_suggests_glmnet? ( sci-CRAN/glmnet )
	r_suggests_matrix? ( virtual/Matrix )
	r_suggests_mclust? ( sci-CRAN/mclust )
	r_suggests_metap? ( sci-CRAN/metap )
	r_suggests_mixomics? ( sci-BIOC/mixOmics )
	r_suggests_mltools? ( sci-CRAN/mltools )
	r_suggests_nnet? ( virtual/nnet )
	r_suggests_randomforest? ( sci-CRAN/randomForest )
	r_suggests_ranger? ( sci-CRAN/ranger )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_vita? ( sci-CRAN/vita )
	r_suggests_vsurf? ( sci-CRAN/VSURF )
	r_suggests_xgboost? ( sci-CRAN/xgboost )
"
DEPEND="sci-CRAN/Rcpp
	sci-CRAN/caret
	sci-CRAN/MALDIquant
	sci-BIOC/limma
	>=dev-lang/R-4.0
	sci-CRAN/cp4p
	sci-CRAN/statmod
	sci-CRAN/MALDIrppa
	sci-CRAN/reshape2
	sci-CRAN/ggplot2
	sci-CRAN/dplyr
	virtual/Matrix
	sci-CRAN/car
"
RDEPEND="${DEPEND-}
	sci-CRAN/Rcpp
	${R_SUGGESTS-}
"