# Copyright 1999-2024 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Fast, Sensitive, and Accurate In... (see metadata)'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/harmony_1.2.3.tar.gz"
LICENSE='GPL-3'

IUSE="${IUSE-} r_suggests_data_table r_suggests_ggrepel r_suggests_ggthemes
	r_suggests_knitr r_suggests_patchwork r_suggests_rmarkdown
	r_suggests_seurat r_suggests_testthat r_suggests_tidyr
	r_suggests_tidyverse"
R_SUGGESTS="
	r_suggests_data_table? ( sci-CRAN/data_table )
	r_suggests_ggrepel? ( sci-CRAN/ggrepel )
	r_suggests_ggthemes? ( sci-CRAN/ggthemes )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_patchwork? ( sci-CRAN/patchwork )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_seurat? ( >=sci-CRAN/Seurat-4.1.1 )
	r_suggests_testthat? ( sci-CRAN/testthat )
	r_suggests_tidyr? ( sci-CRAN/tidyr )
	r_suggests_tidyverse? ( sci-CRAN/tidyverse )
"
DEPEND=">=dev-lang/R-3.5.0
	sci-CRAN/Rcpp
	sci-CRAN/cowplot
	sci-CRAN/dplyr
	sci-CRAN/ggplot2
	virtual/Matrix
	sci-CRAN/tibble
	sci-CRAN/rlang
	sci-CRAN/RhpcBLASctl
"
RDEPEND="${DEPEND-}
	sci-CRAN/Rcpp
	sci-CRAN/RcppArmadillo
	sci-CRAN/RcppProgress
	${R_SUGGESTS-}
"

_UNRESOLVED_PACKAGES=( 'SingleCellExperiment' )