# Copyright 1999-2025 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Evolutionary Transcriptomics'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/myTAI_2.3.4.tar.gz"
LICENSE='GPL-2'

IUSE="${IUSE-} r_suggests_decor r_suggests_gganimate r_suggests_knitr
	r_suggests_mgcv r_suggests_rmarkdown r_suggests_seurat
	r_suggests_seuratobject r_suggests_taxize r_suggests_testthat
	r_suggests_uwot"
R_SUGGESTS="
	r_suggests_decor? ( sci-CRAN/decor )
	r_suggests_gganimate? ( sci-CRAN/gganimate )
	r_suggests_knitr? ( >=sci-CRAN/knitr-1.6 )
	r_suggests_mgcv? ( virtual/mgcv )
	r_suggests_rmarkdown? ( >=sci-CRAN/rmarkdown-0.3.3 )
	r_suggests_seurat? ( sci-CRAN/Seurat )
	r_suggests_seuratobject? ( sci-CRAN/SeuratObject )
	r_suggests_taxize? ( sci-CRAN/taxize )
	r_suggests_testthat? ( >=sci-CRAN/testthat-0.9.1 )
	r_suggests_uwot? ( sci-CRAN/uwot )
"
DEPEND="virtual/Matrix
	sci-CRAN/ggtext
	sci-CRAN/purrr
	sci-CRAN/ggrepel
	sci-CRAN/Rcpp
	>=sci-CRAN/fitdistrplus-1.1.5
	sci-CRAN/ggplotify
	sci-CRAN/pheatmap
	>=dev-lang/R-4.1
	>=sci-CRAN/RColorBrewer-1.1.2
	>=sci-CRAN/dplyr-0.3.0
	sci-CRAN/S7
	sci-CRAN/ggforce
	sci-CRAN/ggridges
	>=sci-CRAN/ggplot2-1.0.1
	sci-CRAN/tibble
	sci-CRAN/patchwork
	sci-CRAN/tidyr
	sci-CRAN/memoise
	>=sci-CRAN/readr-0.2.2
"
RDEPEND="${DEPEND-}
	sci-CRAN/RcppArmadillo
	sci-CRAN/RcppThread
	sci-CRAN/Rcpp
	${R_SUGGESTS-}
"

_UNRESOLVED_PACKAGES=( 'DESeq2' )