# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A modular, python-based framework for mass spectrometry."

HOMEPAGE="https://github.com/mannlabs/alphapept"
LICENSE="MIT"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="develop develop-stable gui gui-stable legacy legacy-stable stable"
DEPENDENCIES="dev-python/biopython[${PYTHON_USEDEP}]
	dev-python/click[${PYTHON_USEDEP}]
	dev-python/fastcore[${PYTHON_USEDEP}]
	dev-python/h5py[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/networkx[${PYTHON_USEDEP}]
	dev-python/numba[${PYTHON_USEDEP}]
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]
	dev-python/pyteomics[${PYTHON_USEDEP}]
	dev-python/pyyaml[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/sqlalchemy[${PYTHON_USEDEP}]
	dev-python/tables[${PYTHON_USEDEP}]
	dev-python/tqdm[${PYTHON_USEDEP}]
	dev-python/alphatims[${PYTHON_USEDEP}]
	dev-python/alpharaw[${PYTHON_USEDEP}]
	develop? ( dev-python/bumpversion[${PYTHON_USEDEP}] )
	develop? ( dev-python/jupyter-contrib-nbextensions[${PYTHON_USEDEP}] )
	develop? ( dev-python/jupyter[${PYTHON_USEDEP}] )
	develop? ( dev-python/nbdev[${PYTHON_USEDEP}] )
	develop? ( dev-python/pyinstaller[${PYTHON_USEDEP}] )
	develop? ( dev-python/twine[${PYTHON_USEDEP}] )
	develop? ( dev-python/wget[${PYTHON_USEDEP}] )
	develop-stable? ( dev-python/bumpversion[${PYTHON_USEDEP}] )
	develop-stable? ( dev-python/jupyter-contrib-nbextensions[${PYTHON_USEDEP}] )
	develop-stable? ( >=dev-python/jupyter-1.0.0[${PYTHON_USEDEP}] )
	develop-stable? ( dev-python/nbdev[${PYTHON_USEDEP}] )
	develop-stable? ( dev-python/pyinstaller[${PYTHON_USEDEP}] )
	develop-stable? ( >=dev-python/twine-3.4.1[${PYTHON_USEDEP}] )
	develop-stable? ( dev-python/wget[${PYTHON_USEDEP}] )
	gui? ( dev-python/plotly-express[${PYTHON_USEDEP}] )
	gui? ( dev-python/streamlit[${PYTHON_USEDEP}] )
	gui? ( dev-python/watchdog[${PYTHON_USEDEP}] )
	gui? ( dev-python/wget[${PYTHON_USEDEP}] )
	gui-stable? ( dev-python/plotly-express[${PYTHON_USEDEP}] )
	gui-stable? ( dev-python/streamlit[${PYTHON_USEDEP}] )
	gui-stable? ( ~dev-python/watchdog-2.1.9[${PYTHON_USEDEP}] )
	gui-stable? ( dev-python/wget[${PYTHON_USEDEP}] )
	legacy? ( dev-python/python-lzf[${PYTHON_USEDEP}] )
	legacy-stable? ( dev-python/python-lzf[${PYTHON_USEDEP}] )
	stable? ( dev-python/biopython[${PYTHON_USEDEP}] )
	stable? ( >=dev-python/click-7.1.2[${PYTHON_USEDEP}] )
	stable? ( dev-python/fastcore[${PYTHON_USEDEP}] )
	stable? ( ~dev-python/h5py-3.7.0[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"