# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data"

HOMEPAGE="http://github.com/broadinstitute/CellBender"
LICENSE="BSD 3-Clause"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="dev docs"
DEPENDENCIES="dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/scipy[${PYTHON_USEDEP}]
	dev-python/tables[${PYTHON_USEDEP}]
	dev-python/pandas[${PYTHON_USEDEP}]
	dev-python/pyro-ppl[${PYTHON_USEDEP}]
	dev-python/torch[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	dev-python/loompy[${PYTHON_USEDEP}]
	dev-python/ipython[${PYTHON_USEDEP}]
	dev-python/jupyter[${PYTHON_USEDEP}]
	dev-python/jupyter-contrib-nbextensions[${PYTHON_USEDEP}]
	<dev-python/notebook-7.0.0[${PYTHON_USEDEP}]
	<dev-python/nbconvert-7.0.0[${PYTHON_USEDEP}]
	dev-python/psutil[${PYTHON_USEDEP}]
	dev? ( dev-python/pytest[${PYTHON_USEDEP}] )
	dev? ( dev-python/scikit-learn[${PYTHON_USEDEP}] )
	docs? ( >=dev-python/sphinx-2.1[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-rtd-theme[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-autodoc-typehints[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinxcontrib-programoutput[${PYTHON_USEDEP}] )
	docs? ( dev-python/sphinx-argparse[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"