# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A Structural Variant Post-Processing Package"

HOMEPAGE="https://github.com/bcgsc/mavis.git"
LICENSE=""
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="deploy dev doc test tools"
DEPENDENCIES="dev-python/biopython[${PYTHON_USEDEP}]
	dev-python/braceexpand[${PYTHON_USEDEP}]
	dev-python/colour[${PYTHON_USEDEP}]
	dev-python/Distance[${PYTHON_USEDEP}]
	dev-python/mavis-config[${PYTHON_USEDEP}]
	<dev-python/networkx-3.0[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.13.1[${PYTHON_USEDEP}]
	<dev-python/pandas-2.0[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	>=dev-python/shapely-1.6.4_p1[${PYTHON_USEDEP}]
	dev-python/shortuuid[${PYTHON_USEDEP}]
	dev-python/svgwrite[${PYTHON_USEDEP}]
	>=dev-python/typing-extensions-4.0[${PYTHON_USEDEP}]
	deploy? ( dev-python/twine[${PYTHON_USEDEP}] )
	deploy? ( dev-python/wheel[${PYTHON_USEDEP}] )
	dev? ( dev-python/black[${PYTHON_USEDEP}] )
	dev? ( dev-python/flake8[${PYTHON_USEDEP}] )
	dev? ( dev-python/isort[${PYTHON_USEDEP}] )
	dev? ( dev-python/twine[${PYTHON_USEDEP}] )
	dev? ( dev-python/wheel[${PYTHON_USEDEP}] )
	dev? ( dev-python/timeout-decorator[${PYTHON_USEDEP}] )
	dev? ( >=dev-python/coverage-4.2[${PYTHON_USEDEP}] )
	dev? ( >=dev-python/pycodestyle-2.3.1[${PYTHON_USEDEP}] )
	dev? ( dev-python/pytest[${PYTHON_USEDEP}] )
	dev? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	dev? ( dev-python/pytest-xdist[${PYTHON_USEDEP}] )
	dev? ( <dev-python/mkdocs-2.0[${PYTHON_USEDEP}] )
	dev? ( dev-python/markdown-refdocs[${PYTHON_USEDEP}] )
	dev? ( >=dev-python/mkdocs-material-5.4.0[${PYTHON_USEDEP}] )
	dev? ( dev-python/markdown-include[${PYTHON_USEDEP}] )
	dev? ( dev-python/mkdocs-simple-hooks[${PYTHON_USEDEP}] )
	dev? ( <dev-python/types-setuptools-58.0[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/mkdocs-1.1.2[${PYTHON_USEDEP}] )
	doc? ( dev-python/markdown-refdocs[${PYTHON_USEDEP}] )
	doc? ( >=dev-python/mkdocs-material-5.4.0[${PYTHON_USEDEP}] )
	doc? ( dev-python/markdown-include[${PYTHON_USEDEP}] )
	doc? ( dev-python/mkdocs-simple-hooks[${PYTHON_USEDEP}] )
	doc? ( dev-python/mkdocs-awesome-pages-plugin[${PYTHON_USEDEP}] )
	test? ( dev-python/timeout-decorator[${PYTHON_USEDEP}] )
	test? ( >=dev-python/coverage-4.2[${PYTHON_USEDEP}] )
	test? ( >=dev-python/pycodestyle-2.3.1[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
	test? ( dev-python/pytest-cov[${PYTHON_USEDEP}] )
	tools? ( dev-python/pyensembl[${PYTHON_USEDEP}] )
	tools? ( dev-python/simplejson[${PYTHON_USEDEP}] )
	tools? ( dev-python/requests[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"