# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12,3_13,3_14} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="Nanopore base calling augmentation."

HOMEPAGE="https://github.com/nanoporetech/megalodon"
LICENSE="ont_public_licence"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="testing"
DEPENDENCIES=">=dev-python/h5py-2.2.1[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.9.0[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.1.0[${PYTHON_USEDEP}]
	>=dev-python/cython-0.25.2[${PYTHON_USEDEP}]
	dev-python/mappy[${PYTHON_USEDEP}]
	dev-python/pysam[${PYTHON_USEDEP}]
	dev-python/ont-fast5-api[${PYTHON_USEDEP}]
	>=dev-python/tqdm-2.17[${PYTHON_USEDEP}]
	dev-python/ont-pyguppy-client-lib[${PYTHON_USEDEP}]
	dev-python/scikit-learn[${PYTHON_USEDEP}]
	dev-python/seaborn[${PYTHON_USEDEP}]
	dev-python/ont-remora[${PYTHON_USEDEP}]
	testing? ( dev-python/pytest[${PYTHON_USEDEP}] )
	testing? ( dev-python/black[${PYTHON_USEDEP}] )
	testing? ( dev-python/sphinx[${PYTHON_USEDEP}] )
	testing? ( dev-python/sphinx-rtd-theme[${PYTHON_USEDEP}] )
	testing? ( dev-python/sphinx-argparse[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"