# automatically generated by g-sorcery
# please do not edit this file

EAPI=8

REALNAME="${PN}"
LITERALNAME="${PN}"
REALVERSION="${PV}"
DIGEST_SOURCES="yes"
PYTHON_COMPAT=( python{3_11,3_12} )
DISTUTILS_USE_PEP517=standalone

inherit python-r1 gs-pypi

DESCRIPTION="A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabilistic modeling with pyro."

HOMEPAGE="https://docs.pyrovelocity.net"
LICENSE="AGPL-3"
SRC_URI="https://files.pythonhosted.org/packages/source/${REALNAME::1}/${REALNAME}/${REALNAME}-${REALVERSION}.tar.gz"
SOURCEFILE="${REALNAME}-${REALVERSION}.tar.gz"
RESTRICT="test"

SLOT="0"
KEYWORDS="~amd64 ~x86"

IUSE="docs lint plotting test workflows"
DEPENDENCIES="dev-python/adjustText[${PYTHON_USEDEP}]
	dev-python/altair[${PYTHON_USEDEP}]
	dev-python/anndata[${PYTHON_USEDEP}]
	>=dev-python/anyio-4.3.0[${PYTHON_USEDEP}]
	>=dev-python/appdirs-1.4.4[${PYTHON_USEDEP}]
	dev-python/arviz[${PYTHON_USEDEP}]
	dev-python/astropy[${PYTHON_USEDEP}]
	>=dev-python/beartype-0.18.5[${PYTHON_USEDEP}]
	lint? ( >=dev-python/black-23.3.0[${PYTHON_USEDEP}] )
	dev-python/chex[${PYTHON_USEDEP}]
	>=dev-python/click-8.1.7[${PYTHON_USEDEP}]
	>=dev-python/colorlog-6.7.0[${PYTHON_USEDEP}]
	test? ( >=dev-python/coverage-6.2[${PYTHON_USEDEP}] )
	dev-python/daft[${PYTHON_USEDEP}]
	workflows? ( dev-python/dataclasses-json[${PYTHON_USEDEP}] )
	dev-python/diffrax[${PYTHON_USEDEP}]
	>=dev-python/dill-0.3.8[${PYTHON_USEDEP}]
	>=dev-python/diskcache-5.6.1[${PYTHON_USEDEP}]
	dev-python/duckdb[${PYTHON_USEDEP}]
	workflows? ( >=dev-python/dulwich-0.21.7[${PYTHON_USEDEP}] )
	dev-python/einops[${PYTHON_USEDEP}]
	dev-python/Expression[${PYTHON_USEDEP}]
	dev-python/flax[${PYTHON_USEDEP}]
	workflows? ( dev-python/flytekit[${PYTHON_USEDEP}] )
	>=dev-python/frozenlist-1.1.1[${PYTHON_USEDEP}]
	>=dev-python/fsspec-2024.3.0[${PYTHON_USEDEP}]
	docs? ( >=dev-python/furo-2023.5.20[${PYTHON_USEDEP}] )
	workflows? ( >=dev-python/google-api-python-client-2.79.0[${PYTHON_USEDEP}] )
	>=dev-python/greenlet-3.0.3[${PYTHON_USEDEP}]
	>=dev-python/h5py-3.9.0[${PYTHON_USEDEP}]
	>=dev-python/httpx-0.27.0[${PYTHON_USEDEP}]
	workflows? ( dev-python/hydra-core[${PYTHON_USEDEP}] )
	workflows? ( dev-python/hydra-zen[${PYTHON_USEDEP}] )
	test? ( >=dev-python/hypothesis-6.71.0[${PYTHON_USEDEP}] )
	dev-python/ibis-framework[${PYTHON_USEDEP}]
	test? ( >=dev-python/ipdb-0.13.13[${PYTHON_USEDEP}] )
	test? ( >=dev-python/ipython-8.11.0[${PYTHON_USEDEP}] )
	workflows? ( >=dev-python/ipywidgets-8.0.0[${PYTHON_USEDEP}] )
	dev-python/jax[${PYTHON_USEDEP}]
	dev-python/jaxlib[${PYTHON_USEDEP}]
	dev-python/jaxtyping[${PYTHON_USEDEP}]
	docs? ( dev-python/jupyter-cache[${PYTHON_USEDEP}] )
	docs? ( >=dev-python/jupyterlab-4.0.9[${PYTHON_USEDEP}] )
	docs? ( dev-python/jupytext[${PYTHON_USEDEP}] )
	workflows? ( dev-python/jupytext[${PYTHON_USEDEP}] )
	dev-python/leidenalg[${PYTHON_USEDEP}]
	dev-python/lightning[${PYTHON_USEDEP}]
	dev-python/llvmlite[${PYTHON_USEDEP}]
	workflows? ( dev-python/mashumaro[${PYTHON_USEDEP}] )
	>=dev-python/matplotlib-3.9.1[${PYTHON_USEDEP}]
	plotting? ( >=dev-python/matplotlib-venn-0.11.9[${PYTHON_USEDEP}] )"
BDEPEND="${DEPENDENCIES}"
RDEPEND="${DEPENDENCIES}"