DEFINED_PHASES=compile install preinst prepare setup
DEPEND=>=virtual/jdk-1.5:* >=dev-java/java-config-2.2.0-r3
DESCRIPTION=Variant detection (germline, multi-sample, somatic mutations, CNA, SNP calls)
EAPI=7
HOMEPAGE=http://varscan.sourceforge.net/
KEYWORDS=~amd64
LICENSE=Non-profit-OSL-3.0
RDEPEND=>=virtual/jre-1.5:* sci-biology/bam-readcount !sci-biology/VarScan-bin >=dev-java/java-config-2.2.0-r3
SLOT=0
SRC_URI=https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.4.source.jar?raw=true -> VarScan.v2.4.4.source.jar
_eclasses_=java-pkg-2	6e6478d8b78f18251c008bad32994df9	java-utils-2	df5a29aeeb243804a2f5ef024c8467a9
_md5_=f45862f9ed37edca25ebb4ac02d0d048