# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Biological Data Analysis and Visualization'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/BioUtils_0.1.3.tar.gz"
LICENSE='MIT'

IUSE="${IUSE-} r_suggests_knitr r_suggests_msigdbr r_suggests_plotly
	r_suggests_rmarkdown"
R_SUGGESTS="
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_msigdbr? ( sci-CRAN/msigdbr )
	r_suggests_plotly? ( sci-CRAN/plotly )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
"
DEPEND=">=dev-lang/R-3.1.2
	sci-CRAN/tidyr
	sci-BIOC/limma
	sci-BIOC/GEOquery
	sci-BIOC/Biobase
	sci-CRAN/glmnet
	sci-CRAN/ggplot2
	sci-CRAN/pheatmap
	sci-BIOC/fgsea
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"