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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<longdescription>
		Biological Data Analysis and Visualization // Provides tools for
		the analysis and visualization of gene expression data from the
		NCBI Gene Expression Omnibus (GEO). Implements a complete
		workflow including data import, quality control, differential
		expression analysis, co-expression network analysis, pathway
		enrichment, and multi-gene biomarker discovery. Differential
		expression uses the empirical Bayes moderated t-statistic of
		Smyth (2004) doi:10.2202/1544-6115.1027. Gene set enrichment
		analysis follows Subramanian et al. (2005)
		doi:10.1073/pnas.0506580102. Multi-gene biomarker selection
		uses the LASSO method of Tibshirani (1996)
		doi:10.1111/j.2517-6161.1996.tb02080.x. Effect sizes are
		computed as Cohen's d following Cohen (1988).
	</longdescription>
</pkgmetadata>
