# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Enrichment Analysis of Clinicall... (see metadata)'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/CohortContrast_1.0.0.tar.gz"
LICENSE='Apache-2.0'

IUSE="${IUSE-} r_suggests_bit64 r_suggests_cluster r_suggests_dbi
	r_suggests_duckdb r_suggests_igraph r_suggests_knitr
	r_suggests_matrix r_suggests_patientprofiles r_suggests_processx
	r_suggests_readr r_suggests_reshape2 r_suggests_reticulate
	r_suggests_rmarkdown r_suggests_rpostgres r_suggests_testthat
	r_suggests_vegan"
R_SUGGESTS="
	r_suggests_bit64? ( sci-CRAN/bit64 )
	r_suggests_cluster? ( virtual/cluster )
	r_suggests_dbi? ( >=sci-CRAN/DBI-1.2.0 )
	r_suggests_duckdb? ( sci-CRAN/duckdb )
	r_suggests_igraph? ( sci-CRAN/igraph )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_matrix? ( virtual/Matrix )
	r_suggests_patientprofiles? ( >=sci-CRAN/PatientProfiles-1.1.0 )
	r_suggests_processx? ( sci-CRAN/processx )
	r_suggests_readr? ( sci-CRAN/readr )
	r_suggests_reshape2? ( sci-CRAN/reshape2 )
	r_suggests_reticulate? ( >=sci-CRAN/reticulate-1.26 )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_rpostgres? ( sci-CRAN/RPostgres )
	r_suggests_testthat? ( >=sci-CRAN/testthat-3.0.0 )
	r_suggests_vegan? ( sci-CRAN/vegan )
"
DEPEND=">=sci-CRAN/nanoparquet-0.4.0
	sci-CRAN/cli
	>=sci-CRAN/dplyr-1.0.4
	sci-CRAN/foreach
	>=sci-CRAN/lubridate-1.9.0
	>=sci-CRAN/data_table-1.14.0
	>=sci-CRAN/tidyr-1.0.0
	sci-CRAN/tibble
	sci-CRAN/stringr
	sci-CRAN/purrr
	>=sci-CRAN/CDMConnector-2.0.0
	>=sci-CRAN/CohortConstructor-0.6.0
	sci-CRAN/doParallel
	>=sci-CRAN/omopgenerics-1.3.0
	>=sci-CRAN/jsonlite-1.8.0
"
RDEPEND="${DEPEND-}
	dev-lang/python
	${R_SUGGESTS-}
"