# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Deciphering Biological Networks ... (see metadata)'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/Patterns_1.7.tar.gz"
LICENSE='GPL-2+'

IUSE="${IUSE-} r_suggests_animation r_suggests_biobase r_suggests_biomart
	r_suggests_c060 r_suggests_cascadedata r_suggests_elasticnet
	r_suggests_glmnet r_suggests_knitr r_suggests_pixmap r_suggests_r_rsp
	r_suggests_rmarkdown r_suggests_spls r_suggests_testthat"
R_SUGGESTS="
	r_suggests_animation? ( sci-CRAN/animation )
	r_suggests_biobase? ( sci-BIOC/Biobase )
	r_suggests_biomart? ( sci-BIOC/biomaRt )
	r_suggests_c060? ( sci-CRAN/c060 )
	r_suggests_cascadedata? ( sci-CRAN/CascadeData )
	r_suggests_elasticnet? ( sci-CRAN/elasticnet )
	r_suggests_glmnet? ( sci-CRAN/glmnet )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_pixmap? ( sci-CRAN/pixmap )
	r_suggests_r_rsp? ( sci-CRAN/R_rsp )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_spls? ( sci-CRAN/spls )
	r_suggests_testthat? ( >=sci-CRAN/testthat-3.0.0 )
"
DEPEND="sci-CRAN/lars
	virtual/lattice
	virtual/cluster
	sci-CRAN/igraph
	sci-CRAN/plotrix
	>=dev-lang/R-3.5.0
	sci-CRAN/abind
	sci-CRAN/gplots
	sci-BIOC/limma
	sci-CRAN/tnet
	sci-CRAN/movMF
	sci-CRAN/WGCNA
	sci-CRAN/SelectBoost
	sci-CRAN/e1071
	sci-CRAN/VGAM
	sci-CRAN/nnls
	sci-BIOC/Mfuzz
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"