# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Identify Rogue Taxa in Sets of Phylogenetic Trees'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/Rogue_2.2.1.tar.gz"
LICENSE='GPL-3+'

IUSE="${IUSE-} r_suggests_knitr r_suggests_plottools r_suggests_rmarkdown
	r_suggests_spelling r_suggests_testthat"
R_SUGGESTS="
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_plottools? ( sci-CRAN/PlotTools )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_spelling? ( sci-CRAN/spelling )
	r_suggests_testthat? ( sci-CRAN/testthat )
"
DEPEND=">=dev-lang/R-3.5.0
	virtual/Matrix
	>=sci-CRAN/cli-3.0
	>=sci-CRAN/ape-5.0
	sci-CRAN/fastmatch
	>=sci-CRAN/Rdpack-0.7
	>sci-CRAN/TreeDist-2.2.0
	>=sci-CRAN/TreeTools-1.9.1.9003
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"