# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='An Shiny App for Exploring scRNA... (see metadata)'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/SeuratExplorer_0.1.6.tar.gz"
LICENSE='GPL-3+'

IUSE="${IUSE-} r_suggests_limma r_suggests_patchwork"
R_SUGGESTS="
	r_suggests_limma? ( sci-BIOC/limma )
	r_suggests_patchwork? ( >=sci-CRAN/patchwork-1.3.2 )
"
DEPEND="sci-CRAN/shinyBS
	sci-CRAN/shinyjqui
	sci-CRAN/shinyWidgets
	sci-CRAN/shinycssloaders
	sci-CRAN/scales
	sci-CRAN/dplyr
	sci-CRAN/qs2
	sci-CRAN/reshape2
	sci-CRAN/shinyjs
	sci-CRAN/shiny
	sci-CRAN/circlize
	sci-CRAN/rlang
	sci-CRAN/ggalluvial
	>=sci-CRAN/Seurat-5.4.0
	sci-CRAN/shinydashboard
	sci-CRAN/markdown
	>=dev-lang/R-4.1.0
	>=sci-CRAN/ggplot2-4.0.1
	>=sci-CRAN/SeuratObject-5.3.0
	sci-CRAN/DT
	sci-CRAN/knitr
	sci-CRAN/colourpicker
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"

_UNRESOLVED_PACKAGES=(
	'ComplexHeatmap'
	'DESeq2'
	'MAST'
	'sci-CRAN/Signac'
)