# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Phylogenetic Analysis with Discrete Character Data'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/TreeSearch_1.7.0.tar.gz"
LICENSE='GPL-3+'

IUSE="${IUSE-} r_suggests_knitr r_suggests_phangorn r_suggests_quartet
	r_suggests_readxl r_suggests_rmarkdown r_suggests_spelling
	r_suggests_testthat r_suggests_vdiffr"
R_SUGGESTS="
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_phangorn? ( >=sci-CRAN/phangorn-2.2.1 )
	r_suggests_quartet? ( sci-CRAN/Quartet )
	r_suggests_readxl? ( sci-CRAN/readxl )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_spelling? ( sci-CRAN/spelling )
	r_suggests_testthat? ( sci-CRAN/testthat )
	r_suggests_vdiffr? ( >=sci-CRAN/vdiffr-1.0.0 )
"
DEPEND="sci-CRAN/shinyjs
	sci-CRAN/fs
	virtual/cluster
	sci-CRAN/stringi
	sci-CRAN/promises
	>sci-CRAN/Rogue-2.0.0
	>=sci-CRAN/shiny-1.6.0
	sci-CRAN/Rcpp
	>=sci-CRAN/TreeDist-2.6.3
	sci-CRAN/protoclust
	sci-CRAN/fastmap
	sci-CRAN/PlotTools
	>=sci-CRAN/TreeTools-1.16
	>=dev-lang/R-4.0
	>=sci-CRAN/Rdpack-0.7
	>=sci-CRAN/cli-3.0
	>=sci-CRAN/fastmatch-1.1.3
	sci-CRAN/future
	>=sci-CRAN/ape-5.6
"
RDEPEND="${DEPEND-}
	sci-CRAN/Rcpp
	sci-CRAN/TreeTools
	${R_SUGGESTS-}
"

_UNRESOLVED_PACKAGES=( 'sci-CRAN/shinytest' )