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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<longdescription>
		Identify Differential Selection // Tests for context-dependent
		selection on cancer driver genes using somatic mutation data.
		The package implements the DiffDriver statistical framework to
		assess whether the strength of positive selection on mutations
		in a driver gene is associated with tumor- or individual-level
		context variables, such as clinical traits, genomic features,
		or immune microenvironment subtypes. DiffDriver estimates
		individual- and position-specific background mutation rates,
		models selection as a deviation from the background rate using
		functional annotations, and tests context effects through a
		latent-variable logistic model. It provides utilities for
		preparing mutation and annotation data, fitting differential-
		selection models, running gene-level association tests,
		summarizing candidate genes, and visualizing mutation patterns.
		The method is described in Zhou et al. (2026) "Detecting
		context-dependent selection on cancer driver genes with
		DiffDriver" doi:10.64898/2026.04.06.716771.
	</longdescription>
</pkgmetadata>
