# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Perform and Visualize EWAS Analysis'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/easyEWAS_1.0.1.tar.gz"
LICENSE='GPL-3+'

IUSE="${IUSE-} r_suggests_annotationhub r_suggests_biocparallel
	r_suggests_cluster r_suggests_experimenthub r_suggests_knitr
	r_suggests_rmarkdown r_suggests_sva"
R_SUGGESTS="
	r_suggests_annotationhub? ( sci-BIOC/AnnotationHub )
	r_suggests_biocparallel? ( sci-BIOC/BiocParallel )
	r_suggests_cluster? ( virtual/cluster )
	r_suggests_experimenthub? ( sci-BIOC/ExperimentHub )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_sva? ( sci-BIOC/sva )
"
DEPEND="sci-CRAN/foreach
	sci-CRAN/lmerTest
	sci-CRAN/magrittr
	sci-CRAN/R_utils
	sci-CRAN/tictoc
	sci-CRAN/lubridate
	sci-CRAN/vroom
	sci-CRAN/withr
	>=dev-lang/R-4.4.0
	sci-CRAN/CMplot
	sci-CRAN/ddpcr
	sci-CRAN/R6
	virtual/boot
	sci-CRAN/dplyr
	sci-CRAN/doParallel
	sci-CRAN/readxl
	virtual/survival
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"

_UNRESOLVED_PACKAGES=(
	'DMRcate'
	'enrichplot'
	'org.Hs.eg.db'
)