# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Gene Expression Decomposition and Integration'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/gedi2_2.3.4.tar.gz"
LICENSE='MIT'

IUSE="${IUSE-} r_suggests_digest r_suggests_glmnet r_suggests_hdf5r
	r_suggests_seurat r_suggests_seuratobject r_suggests_testthat
	r_suggests_uwot"
R_SUGGESTS="
	r_suggests_digest? ( sci-CRAN/digest )
	r_suggests_glmnet? ( sci-CRAN/glmnet )
	r_suggests_hdf5r? ( sci-CRAN/hdf5r )
	r_suggests_seurat? ( sci-CRAN/Seurat )
	r_suggests_seuratobject? ( sci-CRAN/SeuratObject )
	r_suggests_testthat? ( >=sci-CRAN/testthat-3.0.0 )
	r_suggests_uwot? ( sci-CRAN/uwot )
"
DEPEND=">=dev-lang/R-4.0.0
	>=sci-CRAN/R6-2.5.0
	>=sci-CRAN/Rcpp-1.0.0
	sci-CRAN/ggplot2
	virtual/Matrix
	sci-CRAN/scales
"
RDEPEND="${DEPEND-}
	sci-CRAN/Rcpp
	sci-CRAN/RcppEigen
	${R_SUGGESTS-}
"

_UNRESOLVED_PACKAGES=( 'SingleCellExperiment' )