# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Differential Abundance Analysis ... (see metadata)'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/pepdiff_1.0.0.tar.gz"
LICENSE='MIT'

IUSE="${IUSE-} r_suggests_circlize r_suggests_factoextra r_suggests_knitr
	r_suggests_mkinfer r_suggests_rankprod r_suggests_rcolorbrewer
	r_suggests_rmarkdown r_suggests_testthat r_suggests_upsetr
	r_suggests_viridis"
R_SUGGESTS="
	r_suggests_circlize? ( sci-CRAN/circlize )
	r_suggests_factoextra? ( sci-CRAN/factoextra )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_mkinfer? ( sci-CRAN/MKinfer )
	r_suggests_rankprod? ( sci-BIOC/RankProd )
	r_suggests_rcolorbrewer? ( sci-CRAN/RColorBrewer )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_testthat? ( >=sci-CRAN/testthat-3.0.0 )
	r_suggests_upsetr? ( sci-CRAN/UpSetR )
	r_suggests_viridis? ( sci-CRAN/viridis )
"
DEPEND="sci-CRAN/ARTool
	sci-CRAN/cowplot
	sci-CRAN/emmeans
	sci-CRAN/forcats
	sci-CRAN/magrittr
	>=dev-lang/R-4.1.0
	sci-CRAN/stringr
	sci-CRAN/tidyr
	sci-CRAN/dplyr
	sci-CRAN/tibble
	sci-CRAN/rlang
	sci-CRAN/readr
	sci-CRAN/ggplot2
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"

_UNRESOLVED_PACKAGES=( 'ComplexHeatmap' )