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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<longdescription>
		Deriving Phylogenies from Synthesis Trees // Provides tools to
		derive species-level phylogenies from large synthesis mega-
		trees for a wide range of taxonomic groups, including plants,
		birds, mammals, amphibians, reptiles, fish, bees, butterflies,
		and sharks. When a queried species is absent from the mega-
		tree, it is grafted onto the tree using one of two placement
		strategies: attachment at the basal node of the most closely
		related genus or family ('at_basal_node'), or random attachment
		below that basal node with probability proportional to branch
		length ('random_below_basal'). See Li (2023)
		doi:10.1111/ecog.06643 for details. Multiple species from a
		genus not represented in the mega-tree are placed as a polytomy
		to preserve clade coherence. The package interfaces with the
		'megatrees' data package, which bundles or downloads on demand
		curated mega-trees. Users can also provide their own mega-
		trees.
	</longdescription>
</pkgmetadata>
