# Copyright 1999-2026 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Metabolomics and Spectral Data Analysis and Mining'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/specmine_3.1.8.tar.gz"
LICENSE='GPL-2+'

IUSE="${IUSE-} r_suggests_cluster r_suggests_curl r_suggests_cyjshiny
	r_suggests_dbscan r_suggests_fastica r_suggests_ggdendro
	r_suggests_kegggraph r_suggests_keggrest r_suggests_knitr
	r_suggests_mclust r_suggests_pins r_suggests_qdap r_suggests_qpdf
	r_suggests_randomforest r_suggests_rcurl r_suggests_reticulate
	r_suggests_rgl r_suggests_rmarkdown r_suggests_rtsne
	r_suggests_scatterplot3d r_suggests_specmine_datasets r_suggests_uwot"
R_SUGGESTS="
	r_suggests_cluster? ( virtual/cluster )
	r_suggests_curl? ( sci-CRAN/curl )
	r_suggests_cyjshiny? ( sci-CRAN/cyjShiny )
	r_suggests_dbscan? ( sci-CRAN/dbscan )
	r_suggests_fastica? ( sci-CRAN/fastICA )
	r_suggests_ggdendro? ( sci-CRAN/ggdendro )
	r_suggests_kegggraph? ( sci-BIOC/KEGGgraph )
	r_suggests_keggrest? ( sci-BIOC/KEGGREST )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_mclust? ( sci-CRAN/mclust )
	r_suggests_pins? ( sci-CRAN/pins )
	r_suggests_qdap? ( sci-CRAN/qdap )
	r_suggests_qpdf? ( sci-CRAN/qpdf )
	r_suggests_randomforest? ( sci-CRAN/randomForest )
	r_suggests_rcurl? ( sci-CRAN/RCurl )
	r_suggests_reticulate? ( sci-CRAN/reticulate )
	r_suggests_rgl? ( sci-CRAN/rgl )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_rtsne? ( sci-CRAN/Rtsne )
	r_suggests_scatterplot3d? ( sci-CRAN/scatterplot3d )
	r_suggests_specmine_datasets? ( sci-CRAN/specmine_datasets )
	r_suggests_uwot? ( sci-CRAN/uwot )
"
DEPEND="sci-CRAN/caret
	sci-CRAN/GGally
	sci-CRAN/narray
	sci-CRAN/pcaPP
	sci-CRAN/readJDX
	sci-CRAN/imputeTS
	virtual/MASS
	sci-CRAN/ellipse
	sci-CRAN/Metrics
	sci-CRAN/baseline
	sci-CRAN/compare
	sci-BIOC/genefilter
	sci-CRAN/ggplot2
	sci-CRAN/plotly
	sci-CRAN/pls
	>=dev-lang/R-4.0.0
	sci-CRAN/RColorBrewer
	sci-BIOC/impute
"
RDEPEND="${DEPEND-}
	dev-lang/python
	dev-lang/python
	${R_SUGGESTS-}
"

_UNRESOLVED_PACKAGES=(
	'MAIT'
	'xcms'
)